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Swain Lab
aliby
alibylite
Commits
77610e8c
Commit
77610e8c
authored
2 years ago
by
Alán Muñoz
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fix/docs(signal): fix skip_pick and add quickdocs
parent
10fff5fb
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io/signal.py
+9
-4
9 additions, 4 deletions
io/signal.py
with
9 additions
and
4 deletions
io/signal.py
+
9
−
4
View file @
77610e8c
...
...
@@ -83,7 +83,7 @@ class Signal(BridgeH5):
elif
isinstance
(
df
,
list
):
return
[
self
.
get_retained
(
d
)
for
d
in
df
]
def
apply_prepost
(
self
,
dataset
:
str
):
def
apply_prepost
(
self
,
dataset
:
str
,
skip_pick
:
bool
=
None
):
"""
Apply modifier operations (picker, merger) to a given dataframe.
"""
...
...
@@ -117,7 +117,7 @@ class Signal(BridgeH5):
(
merged
,
df
.
loc
[
nonmergeable_ids
]),
names
=
df
.
index
.
names
)
if
"
modifiers/picks
"
in
f
:
if
"
modifiers/picks
"
in
f
and
not
skip_pick
:
picks
=
self
.
get_picks
(
names
=
merged
.
index
.
names
)
# missing_cells = [i for i in picks if tuple(i) not in
# set(merged.index)]
...
...
@@ -155,10 +155,12 @@ class Signal(BridgeH5):
@property
def
p_siglist
(
self
):
"""
Print signal list
"""
self
.
datasets
@property
def
siglist
(
self
):
"""
Return list of signals
"""
try
:
if
not
hasattr
(
self
,
"
_siglist
"
):
self
.
_siglist
=
[]
...
...
@@ -270,7 +272,7 @@ class Signal(BridgeH5):
columns
=
f
[
path
+
"
/timepoint
"
][()],
)
def
get_siglist
(
self
,
name
,
node
):
def
get_siglist
(
self
,
name
:
str
,
node
):
fullname
=
node
.
name
if
isinstance
(
node
,
h5py
.
Group
)
and
np
.
all
(
[
isinstance
(
x
,
h5py
.
Dataset
)
for
x
in
node
.
values
()]
...
...
@@ -297,7 +299,10 @@ class Signal(BridgeH5):
return
obj
[()]
@staticmethod
def
join_tracks_pair
(
target
,
source
):
def
join_tracks_pair
(
target
:
pd
.
Series
,
source
:
pd
.
Series
):
"""
Join two tracks
"""
tgt_copy
=
copy
(
target
)
end
=
find_1st
(
target
.
values
[::
-
1
],
0
,
cmp_larger
)
tgt_copy
.
iloc
[
-
end
:]
=
source
.
iloc
[
-
end
:].
values
...
...
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