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Commit 8fa48974 authored by Alán Muñoz's avatar Alán Muñoz
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pyproject(toml): rm dups

parent 9f93cfd3
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......@@ -13,43 +13,52 @@ packages = [
readme = "README.md"
[tool.poetry.dependencies]
python = ">=3.8, <3.11"
PyYAML = "^6.0"
flatten-dict = "^0.4.2"
gaussianprocessderivatives = "^0.1.5"
h5py = "2.10" # File I/O
numpy = ">=1.21.6"
opencv-python = "4.1.2.30"
p-tqdm = "^1.3.3"
pandas = ">=1.3.3"
py-find-1st = "^1.1.5" # Fast indexing
python = ">=3.8, <3.11"
scikit-learn = ">=1.0.2" # Used for an extraction metric
scipy = ">=1.7.3"
# [tool.poetry.group.pipeline.dependencies]
aliby-baby = "^0.1.14"
dask = "^2021.12.0"
imageio = "2.8.0" # For image-visualisation utilities
p-tqdm = "^1.3.3" # Parallel progress bars
requests-toolbelt = "^0.9.1"
scikit-image = ">=0.18.1"
scikit-learn = ">=1.0.2" # Used for an extraction metric
tqdm = "^4.62.3" # progress bars
xmltodict = "^0.13.0" # read ome-tiff metadata
# [tool.poetry.group.postprocessor.dependencies]
PyYAML = "^6.0"
leidenalg = "^0.8.8"
more-itertools = "^8.12.0"
p-tqdm = "^1.3.3"
pathos = "^0.2.8" # Lambda-friendly multithreading
pycatch22 = "^0.4.2"
scikit-learn = ">=0.22"
scipy = ">=1.4.1"
seaborn = "^0.11.2"
# [tool.poetry.group.network.dependencies]
omero-py = {version = ">=5.6.2", optional = true } # contact omero server
zeroc-ice = {version="3.6.5", optional = true} # networking interface, slow to build
[tool.poetry.group.dev]
optional = true
[tool.poetry.group.dev.dependencies]
black = "^22.6.0"
mypy = "^0.930"
numpydoc = "^1.3.1"
isort = "^5.10.1"
jupyter = "^1.0.0"
flake8 = "^4.0.1"
pyright = "^1.1.258"
pre-commit = "^2.20.0"
seaborn = "^0.11.2"
# [tool.poetry.group.gui.dependencies]
# napari = ">=0.4.16"
......@@ -66,16 +75,6 @@ optional = true
pytest = "^6.2.5"
[tool.poetry.group.dev.dependencies]
black = "^22.6.0"
mypy = "^0.930"
numpydoc = "^1.3.1"
isort = "^5.10.1"
jupyter = "^1.0.0"
flake8 = "^4.0.1"
pyright = "^1.1.258"
pre-commit = "^2.20.0"
[build-system]
requires = ["setuptools", "poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
......
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