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Swain Lab
aliby
alibylite
Commits
de64b664
Commit
de64b664
authored
2 years ago
by
Alán Muñoz
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pyproject(tomlock): Update post-unification
parent
98506501
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poetry.lock
+1465
-527
1465 additions, 527 deletions
poetry.lock
pyproject.toml
+18
-13
18 additions, 13 deletions
pyproject.toml
with
1483 additions
and
540 deletions
poetry.lock
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−
527
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de64b664
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pyproject.toml
+
18
−
13
View file @
de64b664
[tool.poetry]
name
=
"aliby"
version
=
"0.1.4
1
"
version
=
"0.1.4
2
"
description
=
"Process and analyse live-cell imaging data"
authors
=
[
"Alan Munoz <alan.munoz@ed.ac.uk>"
]
packages
=
[
...
...
@@ -12,14 +12,15 @@ packages = [
readme
=
"README.md"
[tool.poetry.dependencies]
python
=
">
=
3.8
,
<
3.11
"
python
=
">
=
3.8
,
<
3.11
"
PyYAML
=
"^6.0"
py-find-1st
=
"^1.1.5"
opencv-python
=
"*"
scipy
=
">
=
1.7
.
3
"
flatten-dict
=
"^0.4.2"
numpy
=
"1.21.6"
# Pinning numpy and pandas makes dep resolution much faster
pandas
=
"1.3.3"
numpy
=
">
=
1.21
.
6
" # Pinning numpy and pandas makes dep resolution much faster
pandas
=
">
=
1.3
.
3
"
aliby-baby
=
"^0.1.14"
gaussianprocessderivatives
=
"^0.1.5"
[tool.poetry.group.pipeline.dependencies]
dask
=
"^2021.12.0"
...
...
@@ -30,24 +31,17 @@ scikit-image = ">=0.18.1"
requests-toolbelt
=
"^0.9.1"
h5py
=
"2.10"
# File I/O
imageio
=
"2.8.0"
# For image-visualisation utilities
aliby-agora
=
"^0.2.30"
aliby-baby
=
"^0.1.14"
aliby-post
=
"^0.1.36"
p-tqdm
=
"^1.3.3"
# Parallel progress bars
xmltodict
=
"^0.13.0"
# read ome-tiff metadata
# zeroc-ice = {version="3.6.5", optional=true} # To be set as optional in the future
[tool.poetry.group.postprocessor.dependencies]
numpy
=
"1.21.6"
# Pinning numpy and pandas makes dep resolution much faster
pandas
=
"1.3.3"
scipy
=
">
=
1.4
.
1
"
PyYAML
=
"^6.0"
more-itertools
=
"^8.12.0"
leidenalg
=
"^0.8.8"
aliby-agora
=
"^0.2.33"
seaborn
=
"^0.11.2"
scikit-learn
=
">
=
0.22
"
gaussianprocessderivatives
=
"^0.1.2"
p-tqdm
=
"^1.3.3"
pycatch22
=
"^0.4.2"
pathos
=
"^0.2.8"
# Lambda-friendly multithreading
...
...
@@ -78,13 +72,24 @@ optional = true
[tool.poetry.group.test.dependencies]
pytest
=
"^6.2.5"
[tool.poetry.group.dev.dependencies]
black
=
"^22.6.0"
mypy
=
"^0.930"
numpydoc
=
"^1.3.1"
isort
=
"^5.10.1"
jupyter
=
"^1.0.0"
flake8
=
"^4.0.1"
pyright
=
"^1.1.258"
pre-commit
=
"^2.20.0"
[build-system]
requires
=
[
"setuptools"
,
"poetry-core>
=
1.0
.
0
"]
build-backend
=
"poetry.core.masonry.api"
[
tool.black
]
line-length
=
79
target-version
=
[
'py3
7
'
]
target-version
=
[
'py3
8
'
]
include
=
'\.pyi?$'
extend-exclude
=
'''
/(
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