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Commit de64b664 authored by Alán Muñoz's avatar Alán Muñoz
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pyproject(tomlock): Update post-unification

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[tool.poetry]
name = "aliby"
version = "0.1.41"
version = "0.1.42"
description = "Process and analyse live-cell imaging data"
authors = ["Alan Munoz <alan.munoz@ed.ac.uk>"]
packages = [
......@@ -12,14 +12,15 @@ packages = [
readme = "README.md"
[tool.poetry.dependencies]
python = ">=3.8,<3.11"
python = ">=3.8, <3.11"
PyYAML = "^6.0"
py-find-1st = "^1.1.5"
opencv-python = "*"
scipy = ">=1.7.3"
flatten-dict = "^0.4.2"
numpy = "1.21.6" # Pinning numpy and pandas makes dep resolution much faster
pandas = "1.3.3"
numpy = ">=1.21.6" # Pinning numpy and pandas makes dep resolution much faster
pandas = ">=1.3.3"
aliby-baby = "^0.1.14"
gaussianprocessderivatives = "^0.1.5"
[tool.poetry.group.pipeline.dependencies]
dask = "^2021.12.0"
......@@ -30,24 +31,17 @@ scikit-image = ">=0.18.1"
requests-toolbelt = "^0.9.1"
h5py = "2.10" # File I/O
imageio = "2.8.0" # For image-visualisation utilities
aliby-agora = "^0.2.30"
aliby-baby = "^0.1.14"
aliby-post = "^0.1.36"
p-tqdm = "^1.3.3" # Parallel progress bars
xmltodict = "^0.13.0" # read ome-tiff metadata
# zeroc-ice = {version="3.6.5", optional=true} # To be set as optional in the future
[tool.poetry.group.postprocessor.dependencies]
numpy = "1.21.6" # Pinning numpy and pandas makes dep resolution much faster
pandas = "1.3.3"
scipy = ">=1.4.1"
PyYAML = "^6.0"
more-itertools = "^8.12.0"
leidenalg = "^0.8.8"
aliby-agora = "^0.2.33"
seaborn = "^0.11.2"
scikit-learn = ">=0.22"
gaussianprocessderivatives = "^0.1.2"
p-tqdm = "^1.3.3"
pycatch22 = "^0.4.2"
pathos = "^0.2.8" # Lambda-friendly multithreading
......@@ -78,13 +72,24 @@ optional = true
[tool.poetry.group.test.dependencies]
pytest = "^6.2.5"
[tool.poetry.group.dev.dependencies]
black = "^22.6.0"
mypy = "^0.930"
numpydoc = "^1.3.1"
isort = "^5.10.1"
jupyter = "^1.0.0"
flake8 = "^4.0.1"
pyright = "^1.1.258"
pre-commit = "^2.20.0"
[build-system]
requires = ["setuptools", "poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.black]
line-length = 79
target-version = ['py37']
target-version = ['py38']
include = '\.pyi?$'
extend-exclude = '''
/(
......
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