Commits · 33a321b8e3f6a418389c497b392ffe12e9ad5125 · Swain Lab / aliby / alibylite · GitLab

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Feb 11, 2025
- Merge branch 'devlite' of https://git.ecdf.ed.ac.uk/swain-lab/aliby/alibylite into devlite · 33a321b8
  pswain authored 9 months ago
  
  33a321b8
- change: updated pyproject.toml · be3688fb
  pswain authored 9 months ago
  be3688fb
- Edit README.md · 1b6a72d7
  pswain authored 9 months ago
  
  1b6a72d7
Feb 10, 2025
- change(extractor): Brightfield to multichannel fns · d967ba05
  pswain authored 9 months ago
  
  d967ba05
- doc(alibylite.org) · fd2a25fa
  pswain authored 9 months ago
  
  fd2a25fa
Feb 09, 2025
- change: removed py-find-1st, more-itertools · 3cbbfe5b
  pswain authored 9 months ago
  3cbbfe5b
Feb 05, 2025
- doc: more to alibylite.org · 13f3a474
  pswain authored 9 months ago
  
  13f3a474
Feb 03, 2025
- change(signal): ensure retained uses cutoff · 4a218f43
  pswain authored 9 months ago
  4a218f43
Dec 22, 2024
- remove(local_data_loaders): from extraction · 7f5a90b7
  pswain authored 10 months ago
  
  7f5a90b7
- remove(lineage): rm lineage and track_ab · 0325fcfe
  pswain authored 10 months ago
  0325fcfe
- refactor: kymograph to multiindex_utils · c246e25e
  pswain authored 10 months ago
  
  c246e25e
- remove(track): rm track; no longer used · 9b6ed9da
  pswain authored 10 months ago
  
  9b6ed9da
- fix(tiler): initial_tp used when getting image · 6e74f634
  pswain authored 10 months ago
  
  6e74f634
Nov 26, 2024
- feature: added initial_tp · 00f6d4eb
  pswain authored 11 months ago
  
  00f6d4eb
Oct 30, 2024
- change(signal): crash if no lineage info in h5 · 959bc340
  pswain authored Oct 30, 2024
  959bc340
- feature(grouper): add print_signals_by_position · 83d9954e
  pswain authored Oct 30, 2024
  
  83d9954e
Oct 29, 2024
- change(global_settings): max_tps -> 1500 from 1000 · 42f2b373
  pswain authored Oct 29, 2024
  
  42f2b373
- change(examples): added run_zarr · ee15319e
  pswain authored Oct 29, 2024
  
  ee15319e
Oct 11, 2024
- change(grouper): prevent crash when signal missing · 031639cb
  pswain authored Oct 11, 2024
  031639cb
Oct 10, 2024
- change(bridge): added docs · 36b2b714
  pswain authored Oct 10, 2024
  
  36b2b714
Sep 20, 2024
- change: created tiles; traps -> process_traps · 4796a127
  pswain authored Sep 20, 2024
  
  4796a127
Sep 07, 2024
- change(pipeline): tps redefined if too large · 40ca2593
  pswain authored Sep 7, 2024
  
  40ca2593
- change: no obligatory run method in ProcessABC · 38ed8ac2
  pswain authored Sep 7, 2024
  
  38ed8ac2
- fix(signal): error in cols_to_mins · 96fc9449
  pswain authored Sep 7, 2024
  96fc9449
- refactor: split dynamic_writer from writer · e97674ea
  pswain authored Sep 7, 2024
  
  e97674ea
Sep 06, 2024
- change: add global_settings.default_time_interval · ff2fc89f
  pswain authored Sep 6, 2024
  
  ff2fc89f
Aug 16, 2024
- feature(PipelineParameters): channels in general · 60cf9aae
  pswain authored Aug 16, 2024
  60cf9aae
Aug 08, 2024
- change: remove total and total_squared as defaults · fb06b862
  pswain authored Aug 8, 2024
  
  fb06b862
Aug 06, 2024
- change: added total_squared to cell.py · f451a325
  pswain authored Aug 6, 2024
  f451a325
Aug 02, 2024
- fix(metadata_legacy): wrong type in time_settings · 2c329334
  pswain authored Aug 2, 2024
  2c329334
- change(grouper): removed annoying tqdm · b4d4c8de
  pswain authored Aug 2, 2024
  
  b4d4c8de
Jul 26, 2024
- change(grouped): added all_available · 98d342c7
  pswain authored Jul 26, 2024
  
  98d342c7
Jun 26, 2024
- feature: positions allowed different signals · d26e55dd
  pswain authored Jun 26, 2024
  d26e55dd
- change: global_parameters -> global_settings · 9c44c5d6
  pswain authored Jun 26, 2024
  
  9c44c5d6
Jun 25, 2024
- added default outline fns to global_parameters · d0e03c63
  pswain authored Jun 25, 2024
  
  d0e03c63
- change: tidied metadata · f8144423
  pswain authored Jun 25, 2024
  f8144423
- change: in process, converting metadata · 288ac2c4
  pswain authored Jun 25, 2024
  
  288ac2c4
Jun 22, 2024
- tidy: metadata; created metadata_legacy · d88f4e7f
  pswain authored Jun 22, 2024
  
  d88f4e7f
Jun 19, 2024
- change(tiler): added magnification · 7865490f
  pswain authored Jun 19, 2024
  7865490f
- change:tile_size defined only in global_parameters · 1f18f39b
  pswain authored Jun 19, 2024
  
  1f18f39b