Commits · fb06b862ca38e82238f8eea94c2ab48a46627ed8 · Swain Lab / aliby / alibylite

Aug 08, 2024
- change: remove total and total_squared as defaults · fb06b862
  pswain authored 7 months ago
  
  fb06b862
Aug 06, 2024
- change: added total_squared to cell.py · f451a325
  pswain authored 7 months ago
  
  Necessary to calculate the noise for the mother and bud.
  f451a325
May 30, 2024
- change(extractor): added cells' spatial locations · 3af41530
  pswain authored 9 months ago
  
  3af41530
- change: alibylite.org; dataset to get_position_ids · 5c948403
  pswain authored 9 months ago
  
  5c948403
Oct 31, 2023
- added baby_sitter to run new version of BABY · abc8df96
  pswain authored 1 year ago
  
  abc8df96
Oct 29, 2023
- extended bgsub to multichannel functions · 4fc31051
  pswain authored 1 year ago
  
  4fc31051
Oct 20, 2023
- cleaned and documented tiler · 8b4bfacd
  pswain authored 1 year ago
  
  8b4bfacd
- changed max5px to max5px_median · b95e79fc
  pswain authored 1 year ago
  
  b95e79fc
Aug 14, 2023
- partway through add multichannel op to extractor · 43b39090
  pswain authored 1 year ago
  
  43b39090
Aug 11, 2023
- added moment_of_inertia to cell functions · 85a66bb2
  pswain authored 1 year ago
  
  85a66bb2
Feb 10, 2023
- Minor tweaks to documentation in extraction · be416008
  pswain authored 2 years ago
  
  be416008
Jan 09, 2023
- remove(ext): delete faiss and k2_major_median · 176aa03f
  Alán Muñoz authored 2 years ago
  
  176aa03f
Oct 04, 2022
- tweak(extractor): pick and choose between bn, np · e73797ca
  Alán Muñoz authored 2 years ago
  
  e73797ca
Sep 29, 2022
- fix(extraction): use correct ranking function · e8e8347c
  Alán Muñoz authored 2 years ago
  
  e8e8347c
Sep 26, 2022
- fix(extraction): clustering cell functions · ab91b83a
  Alán Muñoz authored 2 years ago
  
  ab91b83a
- refactor(extraction): improve cell functions speed · 8614df0f
  Alán Muñoz authored 2 years ago
  
  8614df0f
Sep 24, 2022
- tweak(all): migrate to src/ layout · f2e6557b
  Alán Muñoz authored 2 years ago
  
  f2e6557b
Sep 06, 2022
- finished extractor except traps to tiles · f2a26c5f
  pswain authored 2 years ago
  
  f2a26c5f
Aug 25, 2022
- more docs · 4fca1c47
  pswain authored 2 years ago
  
  4fca1c47
Aug 20, 2022
- more docs · 529b3208
  pswain authored 2 years ago
  
  529b3208
Jul 15, 2022
- clean(fun/cell): simplify code · cde198c5
  Alán Muñoz authored 2 years ago
  
  cde198c5
Jul 14, 2022
- refactor(all): Cleanup, flake8 and minor bugfixes · a96aa920
  Alán Muñoz authored 2 years ago
  
  a96aa920
Feb 09, 2022
- outcomment foci fun · 29a04f35
  Alán Muñoz authored 3 years ago
  
  29a04f35
Feb 03, 2022
- reorganise and add otsu import · 8b0f55b5
  Alán Muñoz authored 3 years ago
  
  8b0f55b5
- add foci_area_otsu extraction cellfun · 57b145c6
  Alán Muñoz authored 3 years ago
  
  57b145c6
Jan 19, 2022
- remove zerodiv warning and update versions · b5c28226
  Alán Muñoz authored 3 years ago
  
  b5c28226
Jan 18, 2022
- rm max_meds from defaults · c93ae85f
  Alán Muñoz authored 3 years ago
  
  c93ae85f
- bugfix · bff61301
  Alán Muñoz authored 3 years ago
  
  bff61301
- bugfix · a387cfb4
  Alán Muñoz authored 3 years ago
  
  a387cfb4
- bugfix · 80f95b5e
  Alán Muñoz authored 3 years ago
  
  80f95b5e
- bugfix · f0b24f86
  Alán Muñoz authored 3 years ago
  
  f0b24f86
- add med-norm maxes as default · 11e340cc
  Alán Muñoz authored 3 years ago
  
  11e340cc
Jan 07, 2022
- add extraction and utils · 21d8d578
  Alán Muñoz authored 3 years ago
  
  21d8d578