Skip to content
Snippets Groups Projects
Commit c1eaabdc authored by pswain's avatar pswain
Browse files

Update README.md

parent 5530e3f8
No related branches found
No related tags found
No related merge requests found
# Wela
A package to analyse output from aliby.
A package to analyse output from `aliby`.
Wela uses the h5 files created by aliby to create a dataframe and save this dataframe as a text file.
`wela` uses the h5 files created by `aliby` to generate a dataframe and save this dataframe as a text file.
With Wela, you can use a Gaussian process to generate single-cell growth rates.
With `wela`, you can use a Gaussian process to generate single-cell growth rates.
Wela includes plotting routines for common tasks, such as kymographs and plotting single lineages for one ALCATRAS trap.
`wela` includes plotting routines for common tasks, such as kymographs and plotting single lineages for one ALCATRAS trap.
## Installing
Clone the gitlab repository and install with poetry.
Clone the gitlab repository and install with `poetry`.
## Getting started
There are example scripts in `wela/examples`.
Use
Consult
- `create_tsv.py` to see how to generate a tsv file of the data
- `plot_kymograph.py` to see how to generate a kymograph
- `run_gr.py` to learn how to estimate single-cell growth rates.
- `create_tsv.py` to generate a tsv (tab separated value) file of the data
- `plot_kymograph.py` to generate a kymograph
- `run_gr.py` to estimate single-cell growth rates.
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment