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igmmbioinformatics
trio-whole-exome
Commits
47a33651
Commit
47a33651
authored
4 years ago
by
ameyner2
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Reconfigured generic python module section
parent
f0e21b68
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docs/Software_installation.md
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...
@@ -107,7 +107,15 @@ mkdir resource
...
@@ -107,7 +107,15 @@ mkdir resource
mv /home/u035/project/software/install/1000G_phase3_hg38/1000g.phase3.100k.b38* resource/
mv /home/u035/project/software/install/1000G_phase3_hg38/1000g.phase3.100k.b38* resource/
```
```
## VASE
## Python modules
Users should include this line in any shell scripts requiring these modules:
```
export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
```
### VASE
VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020.
VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020.
...
@@ -118,13 +126,7 @@ cd vase
...
@@ -118,13 +126,7 @@ cd vase
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
```
```
Users should include this line in any shell scripts calling VASE:
### XlsxWriter
```
export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
```
## XlsxWriter
```
```
cd /home/u035/project/software/install
cd /home/u035/project/software/install
...
@@ -132,5 +134,3 @@ git clone https://github.com/jmcnamara/XlsxWriter.git
...
@@ -132,5 +134,3 @@ git clone https://github.com/jmcnamara/XlsxWriter.git
cd XlsxWriter
cd XlsxWriter
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
```
```
See above for PYTHONPATH.
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