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Commit 47a33651 authored by ameyner2's avatar ameyner2
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Reconfigured generic python module section

parent f0e21b68
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...@@ -107,7 +107,15 @@ mkdir resource ...@@ -107,7 +107,15 @@ mkdir resource
mv /home/u035/project/software/install/1000G_phase3_hg38/1000g.phase3.100k.b38* resource/ mv /home/u035/project/software/install/1000G_phase3_hg38/1000g.phase3.100k.b38* resource/
``` ```
## VASE ## Python modules
Users should include this line in any shell scripts requiring these modules:
```
export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
```
### VASE
VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020. VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020.
...@@ -118,13 +126,7 @@ cd vase ...@@ -118,13 +126,7 @@ cd vase
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software /home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
``` ```
Users should include this line in any shell scripts calling VASE: ### XlsxWriter
```
export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
```
## XlsxWriter
``` ```
cd /home/u035/project/software/install cd /home/u035/project/software/install
...@@ -132,5 +134,3 @@ git clone https://github.com/jmcnamara/XlsxWriter.git ...@@ -132,5 +134,3 @@ git clone https://github.com/jmcnamara/XlsxWriter.git
cd XlsxWriter cd XlsxWriter
/home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software /home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
``` ```
See above for PYTHONPATH.
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