Merge branch 'mwham_develop' into 'master'
Bin dir, CI build fixes See merge request !8
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- .gitlab-ci.yml 5 additions, 4 deletions.gitlab-ci.yml
- assets/trio_whole_exome_bcbio_template.yaml 2 additions, 1 deletionassets/trio_whole_exome_bcbio_template.yaml
- bin/G2P.pm 0 additions, 0 deletionsbin/G2P.pm
- bin/NHS_WES_check_PED_aff_probands.py 0 additions, 0 deletionsbin/NHS_WES_check_PED_aff_probands.py
- bin/NHS_WES_check_PED_quad.py 0 additions, 0 deletionsbin/NHS_WES_check_PED_quad.py
- bin/NHS_WES_extract_shared_vars.py 0 additions, 0 deletionsbin/NHS_WES_extract_shared_vars.py
- bin/NHS_WES_extract_trio_FAM_PRO_ID.py 0 additions, 0 deletionsbin/NHS_WES_extract_trio_FAM_PRO_ID.py
- bin/NHS_WES_filter_LQ_GT.py 0 additions, 0 deletionsbin/NHS_WES_filter_LQ_GT.py
- bin/NHS_WES_generate_DEC_IGV.py 0 additions, 0 deletionsbin/NHS_WES_generate_DEC_IGV.py
- bin/NHS_WES_generate_DEC_IGV.py.v1 0 additions, 0 deletionsbin/NHS_WES_generate_DEC_IGV.py.v1
- bin/NHS_WES_generate_DEC_IGV.py_wrong_gene_trans 0 additions, 0 deletionsbin/NHS_WES_generate_DEC_IGV.py_wrong_gene_trans
- bin/NHS_WES_generate_DEC_IGV_aff_probands.py 0 additions, 0 deletionsbin/NHS_WES_generate_DEC_IGV_aff_probands.py
- bin/NHS_WES_generate_DEC_IGV_sib_from_quad.py 0 additions, 0 deletionsbin/NHS_WES_generate_DEC_IGV_sib_from_quad.py
- bin/NHS_WES_generate_DEC_IGV_trio_from_quad.py 0 additions, 0 deletionsbin/NHS_WES_generate_DEC_IGV_trio_from_quad.py
- bin/NHS_WES_generate_aff_sib_ped.py 0 additions, 0 deletionsbin/NHS_WES_generate_aff_sib_ped.py
- bin/NHS_WES_generate_coverage_result_file.py 0 additions, 0 deletionsbin/NHS_WES_generate_coverage_result_file.py
- bin/NHS_WES_generate_trio_VCF.py 0 additions, 0 deletionsbin/NHS_WES_generate_trio_VCF.py
- bin/NHS_WES_generate_trio_ped.py 0 additions, 0 deletionsbin/NHS_WES_generate_trio_ped.py
- bin/NHS_WES_trio_cram_setup.sh 0 additions, 0 deletionsbin/NHS_WES_trio_cram_setup.sh
- bin/NHS_WES_trio_delete_BAM.sh 0 additions, 0 deletionsbin/NHS_WES_trio_delete_BAM.sh
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