Changed to using short project id, version comes after project id, per-family PED and CSV files move to results/project_version/params folder

Project id then version and date for config generation logs, copy PED file rather than symbolic links

Using Nextera read trimming for EdGe sequencing as well as CRF - only need a single template & config file

Updated to reflect more structured organization of resources folder, and new versions of gnomAD exomes (r2.1.1) and genomes (r3.1.1)

Initial documentation of software installation on ultra2 (sdf-cs1) at EIDF/EPCC. Got as far as executing bcbio base installation.