Further script changes

scripts/scheduleScenarios.sh

@@ -7,10 +7,10 @@ fi
 
 
 filename="$1"
-output_dir=/Users/peteralexander/Documents/R_Workspace/UNPLUM/dummy/scenarios/
+output_dir=/exports/csce/eddie/geos/groups/LURG/models/PLUM/output
 echo "Starting scenarios in $output_dir"
 
-while read -r datarow $filename
+while read -r datarow
 do
   IFS=',' read -r -a array <<< "$datarow"
 
@@ -18,7 +18,7 @@ do
      header=( "${array[@]}" )
   else
      scenario="${array[0]}"
-     scenario_dir=$output_dir$scenario
+     scenario_dir=$output_dir/$scenario
      echo $scenario
 
      if [ ! -d "$scenario_dir" ]; then
@@ -26,7 +26,8 @@ do
         continue;
      fi
 
-     echo "qsub runPlum.sh scenario_dir"
+     echo "qsub /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $scenario"
+     qsub /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $scenario
   fi
 done < $filename