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Commit f8e7ba92 authored by Alán Muñoz's avatar Alán Muñoz
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cleanup and add docs

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#!/usr/bin/env python3 #!/usr/bin/env python3
"""
Collection of non-process functions. These are usually called by processes but not fetched automatically..
"""
#!/usr/bin/env python3
# c=CellsHDF.from_source("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5")
import h5py
from core.cells import Cells
import pandas as pd
# f = h5py.File("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5")
fname = "/shared_libs/pipeline-core/scripts/data/20191026_ss_experiments_01/DO6MS2_003store.h5"
f = h5py.File(fname)
tracks = f["/extraction/general/None/area"][()]
cell = Cells.from_source(fname)
from postprocessor.core.processes.picker import Picker, PickerParameters
picker = Picker(cells=cell, parameters=PickerParameters.default())
from postprocessor.core.processor import PostProcessor, PostProParameters
pp = PostProcessor(filename=fname, parameters=PostProParameters.default())
pp.run()
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