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Swain Lab
aliby
alibylite
Commits
f8e7ba92
Commit
f8e7ba92
authored
2 years ago
by
Alán Muñoz
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cleanup and add docs
parent
b2aed9f3
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core/functions/__init__.py
+4
-0
4 additions, 0 deletions
core/functions/__init__.py
core/functions/test_hdf.py
+0
-19
0 additions, 19 deletions
core/functions/test_hdf.py
with
4 additions
and
19 deletions
core/functions/__init__.py
+
4
−
0
View file @
f8e7ba92
#!/usr/bin/env python3
#!/usr/bin/env python3
"""
Collection of non-process functions. These are usually called by processes but not fetched automatically..
"""
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core/functions/test_hdf.py
deleted
100644 → 0
+
0
−
19
View file @
b2aed9f3
#!/usr/bin/env python3
# c=CellsHDF.from_source("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5")
import
h5py
from
core.cells
import
Cells
import
pandas
as
pd
# f = h5py.File("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5")
fname
=
"
/shared_libs/pipeline-core/scripts/data/20191026_ss_experiments_01/DO6MS2_003store.h5
"
f
=
h5py
.
File
(
fname
)
tracks
=
f
[
"
/extraction/general/None/area
"
][()]
cell
=
Cells
.
from_source
(
fname
)
from
postprocessor.core.processes.picker
import
Picker
,
PickerParameters
picker
=
Picker
(
cells
=
cell
,
parameters
=
PickerParameters
.
default
())
from
postprocessor.core.processor
import
PostProcessor
,
PostProParameters
pp
=
PostProcessor
(
filename
=
fname
,
parameters
=
PostProParameters
.
default
())
pp
.
run
()
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