Commits · 1790f15c4ffd970f7764b0a464b591b4fe935144 · Swain Lab / wela

Aug 09, 2024
- change: plot_binned_mean -> plot_binned · 1790f15c
  pswain authored 7 months ago
  
  More general version.
  1790f15c
Aug 08, 2024
- Merge branch 'master' of https://git.ecdf.ed.ac.uk/swain-lab/wela · 2dea9bd3
  pswain authored 7 months ago
  
  2dea9bd3
- change: added misc.py, bud_area to dataloader · af0e5f7f
  pswain authored 7 months ago
  
  af0e5f7f
Aug 07, 2024
- change(plotting): added plot_binned_mean · 84db01b6
  pswain authored 7 months ago
  
  84db01b6
- feature(dataloader.subdf): added group · 264b75dc
  pswain authored 7 months ago
  
  264b75dc
- Merge branch 'master' of https://git.ecdf.ed.ac.uk/swain-lab/wela · d5607865
  pswain authored 7 months ago
  
  d5607865
- fix(plot_lineage): updated share x-axis · 591d631d
  pswain authored 7 months ago
  
  591d631d
Aug 06, 2024
- change: added total_squared to bud fluorescence · 239c9422
  pswain authored 7 months ago
  
  239c9422
Aug 02, 2024
- change: updated example scripts · 20ac636c
  pswain authored 7 months ago
  
  20ac636c
- change: added typing; corrected docs · ce10e335
  pswain authored 7 months ago
  
  ce10e335
- fix(imageviewer): bug in finding channels in tiler · 14b581bd
  pswain authored 7 months ago
  
  added get_h5files
  14b581bd
Jul 30, 2024
- fix(sample_traps_with_cells): fixed sampling · c346d4bd
  pswain authored 7 months ago
  
  Bug in sampling was selecting empty traps.
  c346d4bd
Jul 26, 2024
- change(dataloader): added get_all_signals · 159eeaac
  pswain authored 7 months ago
  
  159eeaac
Jun 25, 2024
- change(dataloader): added find_full_omid · d41d7839
  pswain authored 8 months ago
  
  d41d7839
Jun 20, 2024
- feature(imageviewer): dded sample_traps_with_cells · 3e5f041e
  pswain authored 9 months ago
  
  3e5f041e
Jun 07, 2024
- feature(dataloader): loads nuc_est_conv · e51a5fcd
  pswain authored 9 months ago
  
  e51a5fcd
May 30, 2024
- change(dataloader): loads spatial locations · 43235c00
  pswain authored 9 months ago
  
  43235c00
May 23, 2024
- change: added example scripts for imageviewer · 0e5f8bcc
  pswain authored 10 months ago
  
  0e5f8bcc
- name_change: find_traps_with_cells to print · 99dd1843
  pswain authored 10 months ago
  
  99dd1843
- feature(imageviewer): co-viewing multiple traps · 25c73bb5
  pswain authored 10 months ago
  
  25c73bb5
- change(imageviewer): one class with classmethods · 9ff355a4
  pswain authored 10 months ago
  
  9ff355a4
- fix(imageviewer): checks correctly for empty traps · 4dd9423f
  pswain authored 10 months ago
  
  4dd9423f
May 22, 2024
- change(imageviewer): fixed RemoteImageViewer · 0bb395b2
  Peter Swain authored 10 months ago
  
  image_id found from OMERO; added skip_channels
  0bb395b2
May 21, 2024
- feature(bud_to_bud_plot): added verbose · 7d945946
  Peter Swain authored 10 months ago
  
  7d945946
- refactor(bud_to_bud_plot): changes for clarity · 8752c9ed
  pswain authored 10 months ago
  
  8752c9ed
- docs(get_but_to_bud_data) · ef809724
  pswain authored 10 months ago
  
  ef809724
- fix(growth_rate): for running in parallel · 2451ded3
  pswain authored 10 months ago
  
  Error was in asking for non-existing cells.
  2451ded3
- docs: bud_to_bud_plot, plot_kymograph · 464050a5
  pswain authored 10 months ago
  
  464050a5
- feature(bud_to_bud_plot): more than one bud event · 551acc74
  Peter Swain authored 10 months ago
  
  551acc74
May 20, 2024
- change(plotting): more comments · 3451a53e
  Peter Swain authored 10 months ago
  
  3451a53e
May 17, 2024
- change: updated plot_kymograph for new sorting · b905961b
  pswain authored 10 months ago
  
  b905961b
- fix(kymograph): error in using sort_order · 977ffc4c
  pswain authored 10 months ago
  
  977ffc4c
May 16, 2024
- added sorting2 · 8178f935
  pswain authored 10 months ago
  
  8178f935
- added sorting · 68d4b0ee
  pswain authored 10 months ago
  
  68d4b0ee
- feature(kymograph): added buddings, scale, robust · e9268963
  pswain authored 10 months ago
  
  Using Arin's code. Renamed directories to include Arin's name.
  e9268963
May 14, 2024
- change: rename butterworth_filter ; lowpass_filter · e8c95562
  Peter Swain authored 10 months ago
  
  Renamed butterworth_filter to flavin_filter.
  e8c95562
May 10, 2024
- change(bud_to_bud_plot): creating figure optional · ac00fff8
  Peter Swain authored 10 months ago
  
  ac00fff8
- change: added fft_filtering · baf80431
  Peter Swain authored 10 months ago
  
  Includes butterworth, periodogram, snr.
  baf80431
May 09, 2024
- change(butter_filter): interpolated NaNs · 8291b4e3
  pswain authored 10 months ago
  
  Better to interpolate NaNs than to drop them, which changes spacing between time points.
  8291b4e3
- change: renamed butterfilter to butterworth · cac829ed
  pswain authored 10 months ago
  
  cac829ed