Commits · 4e1a5a34cd989a55b26e21c161d3be2e43b6e374 · igmmbioinformatics / trio-whole-exome

Aug 18, 2021
- Skipping dev tools upgrade - fixed in v1.2.8 bcbio · 4e1a5a34
  ameyner2 authored 3 years ago
  
  4e1a5a34
Aug 13, 2021
- Update Software_installation_ultra2.md · ba17b78c
  ameyner2 authored 3 years ago
  
  ba17b78c
- Fix project > u035/shared. · 43b11fd0
  ameyner2 authored 3 years ago
  
  43b11fd0
- Initial commit of variant prioritization set up. · 01affb5e
  ameyner2 authored 3 years ago
  
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- Update Software_installation_ultra2.md · d667bfff
  ameyner2 authored 3 years ago
  
  d667bfff
- Initial documentation of software installation on ultra2 (sdf-cs1) at... · 537f6c09
  ameyner2 authored 3 years ago
  
  Initial documentation of software installation on ultra2 (sdf-cs1) at EIDF/EPCC. Got as far as executing bcbio base installation.
  537f6c09
Jul 21, 2021
- Moved output cleanup to main pipeline doc · 06a48fb1
  ameyner2 authored 3 years ago
  
  ultra_last_commit
  
  06a48fb1
- Output cleanup moved to main pipeline SOP · c59efbb0
  ameyner2 authored 3 years ago
  
  c59efbb0
Jul 14, 2021
- Update 18610_run_notes.md · 17704038
  ameyner2 authored 3 years ago
  
  17704038
- Fixed name · e4b56827
  ameyner2 authored 3 years ago
  
  e4b56827
- Update 18170_run_notes.md · 040a60c6
  ameyner2 authored 3 years ago
  
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- Update 17200_ITPR1_mosaic_investigation.md · 14f25b8c
  ameyner2 authored 3 years ago
  
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- Add new file · 299d4475
  ameyner2 authored 3 years ago
  
  299d4475
Jun 15, 2021
- Update 18170_run_notes.md · 4f6275a0
  ameyner2 authored 3 years ago
  
  4f6275a0
- Update 18170_run_notes.md · 71b8bac4
  ameyner2 authored 3 years ago
  
  71b8bac4
- Moved output cleanup step · 47b069fd
  ameyner2 authored 3 years ago
  
  47b069fd
- Update 18170_run_notes.md · 4f156807
  ameyner2 authored 3 years ago
  
  4f156807
- Update 18170_run_notes.md · b84776f3
  ameyner2 authored 3 years ago
  
  b84776f3
- Notes for batch 18957 which has some repeated samples from batch 18840. · 025bc8cc
  ameyner2 authored 3 years ago
  
  025bc8cc
May 03, 2021
- Add new file · 6103ee32
  ameyner2 authored 3 years ago
  
  6103ee32
Apr 30, 2021
- Add version to config prep log for CRF data · e1785a53
  ameyner2 authored 3 years ago
  
  e1785a53
Apr 07, 2021
- Fixed qsub commas · 1b3f9df2
  ameyner2 authored 3 years ago
  
  1b3f9df2
- Fixed comma in qsub · 729c19b1
  ameyner2 authored 3 years ago
  
  729c19b1
Feb 15, 2021
- Added grouping folder for output · 16a5f5e8
  ameyner2 authored 4 years ago
  
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Oct 27, 2020
- Added version to commands. · 0daaf36c
  ameyner2 authored 4 years ago
  
  0daaf36c
Sep 30, 2020
- Added version to archiving steps. · dee3fade
  ameyner2 authored 4 years ago
  
  dee3fade
Sep 23, 2020
- Update SOP_alignment_variant_annotation.md · 3841d1c4
  ameyner2 authored 4 years ago
  
  3841d1c4
- Added analysis run version. · 765b1b68
  ameyner2 authored 4 years ago
  
  765b1b68
Sep 09, 2020
- Added CRF sample prep command · b00563bc
  ameyner2 authored 4 years ago
  
  b00563bc
Sep 03, 2020
- Added RTG tools and IGV to installation list · c428be73
  ameyner2 authored 4 years ago
  
  c428be73
Aug 28, 2020
- VEP 100.4 patch · a29ba755
  ameyner2 authored 4 years ago
  
  a29ba755
- Update python modules installation. · 0d27c13d
  ameyner2 authored 4 years ago
  
  0d27c13d
Aug 27, 2020
- Added GATK 3.8 · 1d39e53a
  ameyner2 authored 4 years ago
  
  1d39e53a
- Update Software_installation.md · f3e8dfd6
  ameyner2 authored 4 years ago
  
  f3e8dfd6
- Reminder to set PYTHONPATH before module installation. · ea12750d
  ameyner2 authored 4 years ago
  
  ea12750d
- Notes on re-generating gnomaAD if needed. · a482667b
  ameyner2 authored 4 years ago
  
  a482667b
- Reconfigured generic python module section · 47a33651
  ameyner2 authored 4 years ago
  
  47a33651
- Added XlsxWriter · f0e21b68
  ameyner2 authored 4 years ago
  
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- Details on custom VerifyBamID panel · 3917eacb
  ameyner2 authored 4 years ago
  
  3917eacb
- Delete genomic_data_storyboard_DRAFT4_FINAL.pdf · 667e5942
  ameyner2 authored 4 years ago
  
  667e5942