Commits · c2d4d2753ee4eaf360a936301ce1f0db4f092e10 · igmmbioinformatics / trio-whole-exome

Aug 26, 2020
- No need for dummy G2P entry · c2d4d275
  ameyner2 authored 4 years ago
  
  c2d4d275
- datatarget variation included in base install · c9bbc565
  ameyner2 authored 4 years ago
  
  c9bbc565
- Started documenting ECRF process. · 01106da9
  ameyner2 authored 4 years ago
  
  01106da9
Aug 25, 2020
- Update Software_installation.md · ad7bdf73
  ameyner2 authored 4 years ago
  
  ad7bdf73
- Fix bcbio path · 815ee217
  ameyner2 authored 4 years ago
  
  815ee217
- Install data targets in stages, use previously compiled gnomaAD v3 · 328b1584
  ameyner2 authored 4 years ago
  
  328b1584
Aug 24, 2020
- Removed gnomad datatarget from 2nd installation command. · ba5a6bc7
  ameyner2 authored 4 years ago
  
  ba5a6bc7
- Instructions for manual installation of gnomAD. · fbbccaef
  ameyner2 authored 4 years ago
  
  fbbccaef
Aug 19, 2020
- Samtools/HTSlib version updates · da0410e4
  ameyner2 authored 4 years ago
  
  da0410e4
- Changed u027 to u035 · 45dc3b00
  ameyner2 authored 4 years ago
  
  45dc3b00
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · 453f4080
  ameyner2 authored 4 years ago
  
  453f4080
- Removed unnecessary logging · 751a8a64
  ameyner2 authored 4 years ago
  
  751a8a64
- Fixed bcbio tools path · 14e58455
  ameyner2 authored 4 years ago
  
  14e58455
- Changed log directory to scratch. · 494dcbbd
  ameyner2 authored 4 years ago
  
  494dcbbd
- Bcbio tools path · a426c516
  ameyner2 authored 4 years ago
  
  a426c516
- Tool path. · 07622dc8
  ameyner2 authored 4 years ago
  
  07622dc8
- bcbio tools path. · 4d0c5c4f
  ameyner2 authored 4 years ago
  
  4d0c5c4f
- Tools path. · fac83323
  ameyner2 authored 4 years ago
  
  fac83323
- Clean up pilot submission script, add shared vars script · c0508979
  ameyner2 authored 4 years ago
  
  c0508979
- Merge with master · 0849b8df
  ameyner2 authored 4 years ago
  
  0849b8df
- Updated paths to u035 · cdb153d4
  ameyner2 authored 4 years ago
  
  cdb153d4
- Fixed links. · 4acc9fe9
  ameyner2 authored 4 years ago
  
  4acc9fe9
- Set ulimit -n higher · 5b9b17b2
  ameyner2 authored 4 years ago
  
  5b9b17b2
- Changed bcbio tools path. · 61cd934a
  ameyner2 authored 4 years ago
  
  61cd934a
- Changed bcbio tools path. · 789df815
  ameyner2 authored 4 years ago
  
  789df815
- Changed bcbio tools path. · 07b9158c
  ameyner2 authored 4 years ago
  
  07b9158c
- Initial commit with Aspera, VASE, bcbio. · a86e7448
  ameyner2 authored 4 years ago
  
  a86e7448
Aug 17, 2020
- Upload New File · 5a844370
  ameyner2 authored 4 years ago
  
  5a844370
- Replace genomic_data_storyboard_DRAFT4_FINAL.pdf · 033cb257
  ameyner2 authored 4 years ago
  
  033cb257
- Fixed typo in grep for md5 check · a4e522c7
  ameyner2 authored 4 years ago
  
  a4e522c7
- Initial commit from Word document. · bdee2f98
  ameyner2 authored 4 years ago
  
  bdee2f98
- Fixed u027 to u035 typo. · c38d8c16
  ameyner2 authored 4 years ago
  
  c38d8c16
- Initial commit of archiving SOP from Word version. · 283e04d1
  ameyner2 authored 4 years ago
  
  283e04d1
- PDF of storyboard for trio whole exome process. · 922289d6
  ameyner2 authored 4 years ago
  
  922289d6
- Adobe Illustrator format of storyboard for trio whole exome analysis process. · 40c6f562
  ameyner2 authored 4 years ago
  
  40c6f562
- Added the remainder of the SOP copied from the Word document, with substitution of u035 for u027 · d19c3843
  ameyner2 authored 4 years ago
  
  d19c3843
- Test initial document. · ce80a695
  ameyner2 authored 4 years ago
  
  ce80a695
- SOPs & other documentation · bfe7dc70
  ameyner2 authored 4 years ago
  
  bfe7dc70
Jun 30, 2020
- Backing up trio whole exome scripts · 4f1fc3a7
  ameyner2 authored 4 years ago
  
  4f1fc3a7
Feb 10, 2020
- Fixed if empty line in PED file, added ped check files to md5sum generation for archiving · f4797a54
  ameyner2 authored 5 years ago
  
  f4797a54