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  14. Jul 26, 2023
    • pswain's avatar
      unfinished docs on tracks · ab99d9fb
      pswain authored
      ab99d9fb
    • Arin Wongprommoon's avatar
      fix(postproc): crosscorr catches case where 2nd trace is defined · b88a56f1
      Arin Wongprommoon authored
      WHY IS THIS CHANGE NEEDED?:
      - https://gitlab.com/aliby/aliby/-/jobs/4743945774 complains
        "UnboundLocalError: local variable 'trace_B' referenced before
        assignment".
      - i had forgotten the case where trace_B is defined
      b88a56f1
    • Arin Wongprommoon's avatar
      feat(postproc): crosscorr has stationary option · 97ed1cbb
      Arin Wongprommoon authored
      WHY IS THIS CHANGE NEEDED?:
      - crosscorr process does not have stationary option and therefore will
        not perform calculations correctly if all signals are in-phase.
      
      HOW DOES THE CHANGE SOLVE THE PROBLEM?:
      - Additional 'stationary' parameter that tells the process to compute
        the mean over replicates AND time points.
      
      WHAT SIDE EFFECTS DOES THIS CHANGE HAVE?:
      - crosscorr process not used anywhere else in aliby, so should not
        affect aliby.
      - crosscorr process used in multiple places in skeletons (particularly
        arin's projects).  this is an *additional* parameter, and the existing
        behaviour of crosscorr process is same as stationary=False, so i don't
        expect breaking changes.
      
      EVIDENCE THAT COMMIT WORKS:
      - new test to be run
      
      REFERENCES:
      - #72
      97ed1cbb
  15. Jul 24, 2023
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  19. Jul 12, 2023
  20. Jul 11, 2023
    • Arin Wongprommoon's avatar
      fix(postproc): detrend process only removes columns with all NaNs · 71150227
      Arin Wongprommoon authored
      WHY IS THIS CHANGE NEEDED?:
      - detrend process overzealously removes columns if input dataframes
        have NaNs near the beginning or end.
      - this is because by default, df.dropna() uses how="any", i.e. it drops
        columns with at least one NaN
      
      HOW DOES THE CHANGE SOLVE THE PROBLEM?:
      - drops columns with at least one NaN is not the intention -- the
        intention is to remove column filled with NaNs created by rolling
        window operations.
      - so, specified the how argument
      
      WHAT SIDE EFFECTS DOES THIS CHANGE HAVE?:
      - i honestly don't know why i didn't catch it in the 1.5 years this
        process existed -- this seems so obvious.
      - this is a deprecated signal processing post-process (i use the
        butterworth filter instead), so i don't expect it to break things much
      
      EVIDENCE THAT COMMIT WORKS:
      71150227
  21. Jul 03, 2023
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  23. Jun 30, 2023
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