Commits · 9271ba1876771213a226f75925457e1c27ed3cc5 · igmmbioinformatics / trio-whole-exome

Apr 12, 2022

Adding parse_peddy_output check, simplifying process inputs/outputs.... · 9271ba18

mwham authored 2 years ago

Adding parse_peddy_output check, simplifying process inputs/outputs. Outputting BCBio outputs properly, fixing outputs at end - cp-RL and mode: move. Pulling changes to trio_whole_exome_parse_peddy_ped_csv.pl from ultra2 branch

9271ba18

Apr 01, 2022
- Moving BCBio outputs into the right places · 8f754358
  mwham authored 2 years ago
  
  8f754358
Feb 25, 2022

Adding process labels for resource managers. Fixing fastq merging, BCBio.... · 09a5543a

mwham authored 3 years ago

Adding process labels for resource managers. Fixing fastq merging, BCBio. Adding recognition for other input run formats.

09a5543a

Jan 13, 2022
- Passing files into read_inputs instead of values, adding BCBio Yaml writing and execution · 839b6154
  mwham authored 3 years ago
  
  839b6154
Nov 23, 2021
- Making BCBio a param, adding Python to Conda, simplifying MD5sum checking · 64e14f18
  mwham authored 3 years ago
  
  64e14f18
- Fixing fake BCBio · c1953ef5
  mwham authored 3 years ago
  
  c1953ef5
Nov 15, 2021
- Adding BCBio config, connecting up workflows properly · ab4f1f5d
  mwham authored 3 years ago
  
  ab4f1f5d
Oct 14, 2021
- Making file checking its own script · 3dc7bc2f
  mwham authored 3 years ago
  
  3dc7bc2f
Oct 05, 2021
- Initial commit of NextFlow pipeline - test data and MD5 checks · 2ca0e60c
  mwham authored 3 years ago
  
  2ca0e60c