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igmmbioinformatics
trio-whole-exome
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c764a953ece9a768d459421509700c50d4303614
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trio-whole-exome
docs
Software_installation.md
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Oct 04, 2021
_ultra2 docs moved to main copy
· 7fe258a1
not populated not populated
authored
3 years ago
7fe258a1
Sep 03, 2020
Added RTG tools and IGV to installation list
· c428be73
ameyner2
authored
4 years ago
c428be73
Aug 28, 2020
VEP 100.4 patch
· a29ba755
ameyner2
authored
4 years ago
a29ba755
Update python modules installation.
· 0d27c13d
ameyner2
authored
4 years ago
0d27c13d
Aug 27, 2020
Added GATK 3.8
· 1d39e53a
ameyner2
authored
4 years ago
1d39e53a
Update Software_installation.md
· f3e8dfd6
ameyner2
authored
4 years ago
f3e8dfd6
Reminder to set PYTHONPATH before module installation.
· ea12750d
ameyner2
authored
4 years ago
ea12750d
Notes on re-generating gnomaAD if needed.
· a482667b
ameyner2
authored
4 years ago
a482667b
Reconfigured generic python module section
· 47a33651
ameyner2
authored
4 years ago
47a33651
Added XlsxWriter
· f0e21b68
ameyner2
authored
4 years ago
f0e21b68
Details on custom VerifyBamID panel
· 3917eacb
ameyner2
authored
4 years ago
3917eacb
Added date for bcbio dev branch, VASE installation instructions.
· 52ad2ec1
ameyner2
authored
4 years ago
52ad2ec1
Aug 26, 2020
No need for dummy G2P entry
· c2d4d275
ameyner2
authored
4 years ago
c2d4d275
datatarget variation included in base install
· c9bbc565
ameyner2
authored
4 years ago
c9bbc565
Aug 25, 2020
Update Software_installation.md
· ad7bdf73
ameyner2
authored
4 years ago
ad7bdf73
Fix bcbio path
· 815ee217
ameyner2
authored
4 years ago
815ee217
Install data targets in stages, use previously compiled gnomaAD v3
· 328b1584
ameyner2
authored
4 years ago
328b1584
Aug 24, 2020
Removed gnomad datatarget from 2nd installation command.
· ba5a6bc7
ameyner2
authored
4 years ago
ba5a6bc7
Instructions for manual installation of gnomAD.
· fbbccaef
ameyner2
authored
4 years ago
fbbccaef
Aug 19, 2020
bcbio tools path.
· 4d0c5c4f
ameyner2
authored
4 years ago
4d0c5c4f
Tools path.
· fac83323
ameyner2
authored
4 years ago
fac83323
Fixed links.
· 4acc9fe9
ameyner2
authored
4 years ago
4acc9fe9
Set ulimit -n higher
· 5b9b17b2
ameyner2
authored
4 years ago
5b9b17b2
Initial commit with Aspera, VASE, bcbio.
· a86e7448
ameyner2
authored
4 years ago
a86e7448
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