Commits · dbb4a10f82e2bdf25d18f417f8b59eb53668842c · igmmbioinformatics / trio-whole-exome

Dec 08, 2020
- Updated scripts · dbb4a10f
  ameyner2 authored 4 years ago
  
  dbb4a10f
Sep 30, 2020
- Added version to archiving steps. · dee3fade
  ameyner2 authored 4 years ago
  
  dee3fade
Sep 28, 2020
- Mike updates · 3d2e76b8
  ameyner2 authored 4 years ago
  
  3d2e76b8
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · 9e11a751
  ameyner2 authored 4 years ago
  
  9e11a751
- Added version parameter · a13b2c21
  ameyner2 authored 4 years ago
  
  a13b2c21
Sep 23, 2020
- Update SOP_alignment_variant_annotation.md · 3841d1c4
  ameyner2 authored 4 years ago
  
  3841d1c4
- Added analysis run version. · 765b1b68
  ameyner2 authored 4 years ago
  
  765b1b68
- Ignore PBS log files · 5164ffce
  ameyner2 authored 4 years ago
  
  5164ffce
- Mike's scripts for affected proband sets & quads · 6a610263
  ameyner2 authored 4 years ago
  
  6a610263
- Added run version info · 4fe27086
  ameyner2 authored 4 years ago
  
  4fe27086
Sep 09, 2020
- Added Mike's new scripts for prioritization · 523c39ee
  ameyner2 authored 4 years ago
  
  523c39ee
- Added CRF configuration file · 7aed228a
  ameyner2 authored 4 years ago
  
  7aed228a
- Added CRF sample prep command · b00563bc
  ameyner2 authored 4 years ago
  
  b00563bc
Sep 03, 2020
- Added RTG tools and IGV to installation list · c428be73
  ameyner2 authored 4 years ago
  
  c428be73
Aug 28, 2020
- Template for CRF NextSeq samples · 3d3bc60a
  ameyner2 authored 4 years ago
  
  3d3bc60a
- Using symlinks to get around bcbio issues with file merging · e785f110
  ameyner2 authored 4 years ago
  
  e785f110
- VEP 100.4 patch · a29ba755
  ameyner2 authored 4 years ago
  
  a29ba755
- Update python modules installation. · 0d27c13d
  ameyner2 authored 4 years ago
  
  0d27c13d
Aug 27, 2020
- Added GATK 3.8 · 1d39e53a
  ameyner2 authored 4 years ago
  
  1d39e53a
- Update Software_installation.md · f3e8dfd6
  ameyner2 authored 4 years ago
  
  f3e8dfd6
- Reminder to set PYTHONPATH before module installation. · ea12750d
  ameyner2 authored 4 years ago
  
  ea12750d
- Updated queue from sgp to uv2000 · f3bd7ea6
  ameyner2 authored 4 years ago
  
  f3bd7ea6
- Notes on re-generating gnomaAD if needed. · a482667b
  ameyner2 authored 4 years ago
  
  a482667b
- Reconfigured generic python module section · 47a33651
  ameyner2 authored 4 years ago
  
  47a33651
- Added XlsxWriter · f0e21b68
  ameyner2 authored 4 years ago
  
  f0e21b68
- Details on custom VerifyBamID panel · 3917eacb
  ameyner2 authored 4 years ago
  
  3917eacb
- Delete genomic_data_storyboard_DRAFT4_FINAL.pdf · 667e5942
  ameyner2 authored 4 years ago
  
  667e5942
- Delete genomic_data_storyboard_DRAFT4_FINAL.ai · 4820532f
  ameyner2 authored 4 years ago
  
  4820532f
- Delete genomic_data_chart.jpg · 5d1e5d1e
  ameyner2 authored 4 years ago
  
  5d1e5d1e
- Added info about input reads from ECRF · 2b045e62
  ameyner2 authored 4 years ago
  
  2b045e62
- Fixed paths, needed abs path for MultiQC · a37dad4d
  ameyner2 authored 4 years ago
  
  a37dad4d
- Added date for bcbio dev branch, VASE installation instructions. · 52ad2ec1
  ameyner2 authored 4 years ago
  
  52ad2ec1
Aug 26, 2020
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · 1f0eb463
  ameyner2 authored 4 years ago
  
  1f0eb463
- Scripts to manage samples from CRF · 974d6f6f
  ameyner2 authored 4 years ago
  
  974d6f6f
- No need for dummy G2P entry · c2d4d275
  ameyner2 authored 4 years ago
  
  c2d4d275
- datatarget variation included in base install · c9bbc565
  ameyner2 authored 4 years ago
  
  c9bbc565
- Started documenting ECRF process. · 01106da9
  ameyner2 authored 4 years ago
  
  01106da9
Aug 25, 2020
- Update Software_installation.md · ad7bdf73
  ameyner2 authored 4 years ago
  
  ad7bdf73
- Fix bcbio path · 815ee217
  ameyner2 authored 4 years ago
  
  815ee217
- Install data targets in stages, use previously compiled gnomaAD v3 · 328b1584
  ameyner2 authored 4 years ago
  
  328b1584