Commits · 6a610263fb2130b6b70abdfe9631a9ea5f312882 · igmmbioinformatics / trio-whole-exome

Sep 23, 2020
- Mike's scripts for affected proband sets & quads · 6a610263
  ameyner2 authored 4 years ago
  
  6a610263
- Added run version info · 4fe27086
  ameyner2 authored 4 years ago
  
  4fe27086
Sep 09, 2020
- Added Mike's new scripts for prioritization · 523c39ee
  ameyner2 authored 4 years ago
  
  523c39ee
- Added CRF configuration file · 7aed228a
  ameyner2 authored 4 years ago
  
  7aed228a
- Added CRF sample prep command · b00563bc
  ameyner2 authored 4 years ago
  
  b00563bc
Sep 03, 2020
- Added RTG tools and IGV to installation list · c428be73
  ameyner2 authored 4 years ago
  
  c428be73
Aug 28, 2020
- Template for CRF NextSeq samples · 3d3bc60a
  ameyner2 authored 4 years ago
  
  3d3bc60a
- Using symlinks to get around bcbio issues with file merging · e785f110
  ameyner2 authored 4 years ago
  
  e785f110
- VEP 100.4 patch · a29ba755
  ameyner2 authored 4 years ago
  
  a29ba755
- Update python modules installation. · 0d27c13d
  ameyner2 authored 4 years ago
  
  0d27c13d
Aug 27, 2020
- Added GATK 3.8 · 1d39e53a
  ameyner2 authored 4 years ago
  
  1d39e53a
- Update Software_installation.md · f3e8dfd6
  ameyner2 authored 4 years ago
  
  f3e8dfd6
- Reminder to set PYTHONPATH before module installation. · ea12750d
  ameyner2 authored 4 years ago
  
  ea12750d
- Updated queue from sgp to uv2000 · f3bd7ea6
  ameyner2 authored 4 years ago
  
  f3bd7ea6
- Notes on re-generating gnomaAD if needed. · a482667b
  ameyner2 authored 4 years ago
  
  a482667b
- Reconfigured generic python module section · 47a33651
  ameyner2 authored 4 years ago
  
  47a33651
- Added XlsxWriter · f0e21b68
  ameyner2 authored 4 years ago
  
  f0e21b68
- Details on custom VerifyBamID panel · 3917eacb
  ameyner2 authored 4 years ago
  
  3917eacb
- Delete genomic_data_storyboard_DRAFT4_FINAL.pdf · 667e5942
  ameyner2 authored 4 years ago
  
  667e5942
- Delete genomic_data_storyboard_DRAFT4_FINAL.ai · 4820532f
  ameyner2 authored 4 years ago
  
  4820532f
- Delete genomic_data_chart.jpg · 5d1e5d1e
  ameyner2 authored 4 years ago
  
  5d1e5d1e
- Added info about input reads from ECRF · 2b045e62
  ameyner2 authored 4 years ago
  
  2b045e62
- Fixed paths, needed abs path for MultiQC · a37dad4d
  ameyner2 authored 4 years ago
  
  a37dad4d
- Added date for bcbio dev branch, VASE installation instructions. · 52ad2ec1
  ameyner2 authored 4 years ago
  
  52ad2ec1
Aug 26, 2020
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · 1f0eb463
  ameyner2 authored 4 years ago
  
  1f0eb463
- Scripts to manage samples from CRF · 974d6f6f
  ameyner2 authored 4 years ago
  
  974d6f6f
- No need for dummy G2P entry · c2d4d275
  ameyner2 authored 4 years ago
  
  c2d4d275
- datatarget variation included in base install · c9bbc565
  ameyner2 authored 4 years ago
  
  c9bbc565
- Started documenting ECRF process. · 01106da9
  ameyner2 authored 4 years ago
  
  01106da9
Aug 25, 2020
- Update Software_installation.md · ad7bdf73
  ameyner2 authored 4 years ago
  
  ad7bdf73
- Fix bcbio path · 815ee217
  ameyner2 authored 4 years ago
  
  815ee217
- Install data targets in stages, use previously compiled gnomaAD v3 · 328b1584
  ameyner2 authored 4 years ago
  
  328b1584
Aug 24, 2020
- Removed gnomad datatarget from 2nd installation command. · ba5a6bc7
  ameyner2 authored 4 years ago
  
  ba5a6bc7
- Instructions for manual installation of gnomAD. · fbbccaef
  ameyner2 authored 4 years ago
  
  fbbccaef
- Helper script for gnomAD ggd recipe · 6df113a4
  ameyner2 authored 4 years ago
  
  6df113a4
Aug 19, 2020
- Samtools/HTSlib version updates · da0410e4
  ameyner2 authored 4 years ago
  
  da0410e4
- Changed u027 to u035 · 45dc3b00
  ameyner2 authored 4 years ago
  
  45dc3b00
- Merge branch 'master' of git.ecdf.ed.ac.uk:igmmbioinformatics/trio-whole-exome · 453f4080
  ameyner2 authored 4 years ago
  
  453f4080
- Removed unnecessary logging · 751a8a64
  ameyner2 authored 4 years ago
  
  751a8a64
- Fixed bcbio tools path · 14e58455
  ameyner2 authored 4 years ago
  
  14e58455