Commits · b84776f380dfa26c78b9cc8e8845b6c1c60f903a · igmmbioinformatics / trio-whole-exome

Jun 15, 2021
- Update 18170_run_notes.md · b84776f3
  ameyner2 authored 3 years ago
  
  b84776f3
- Notes for batch 18957 which has some repeated samples from batch 18840. · 025bc8cc
  ameyner2 authored 3 years ago
  
  025bc8cc
May 03, 2021
- Add new file · 6103ee32
  ameyner2 authored 3 years ago
  
  6103ee32
Apr 30, 2021
- Add version to config prep log for CRF data · e1785a53
  ameyner2 authored 3 years ago
  
  e1785a53
Apr 07, 2021
- Fixed qsub commas · 1b3f9df2
  ameyner2 authored 3 years ago
  
  1b3f9df2
- Fixed comma in qsub · 729c19b1
  ameyner2 authored 3 years ago
  
  729c19b1
Feb 15, 2021
- Added grouping folder for output · 16a5f5e8
  ameyner2 authored 4 years ago
  
  16a5f5e8
Oct 27, 2020
- Added version to commands. · 0daaf36c
  ameyner2 authored 4 years ago
  
  0daaf36c
Sep 30, 2020
- Added version to archiving steps. · dee3fade
  ameyner2 authored 4 years ago
  
  dee3fade
Sep 23, 2020
- Update SOP_alignment_variant_annotation.md · 3841d1c4
  ameyner2 authored 4 years ago
  
  3841d1c4
- Added analysis run version. · 765b1b68
  ameyner2 authored 4 years ago
  
  765b1b68
Sep 09, 2020
- Added CRF sample prep command · b00563bc
  ameyner2 authored 4 years ago
  
  b00563bc
Sep 03, 2020
- Added RTG tools and IGV to installation list · c428be73
  ameyner2 authored 4 years ago
  
  c428be73
Aug 28, 2020
- VEP 100.4 patch · a29ba755
  ameyner2 authored 4 years ago
  
  a29ba755
- Update python modules installation. · 0d27c13d
  ameyner2 authored 4 years ago
  
  0d27c13d
Aug 27, 2020
- Added GATK 3.8 · 1d39e53a
  ameyner2 authored 4 years ago
  
  1d39e53a
- Update Software_installation.md · f3e8dfd6
  ameyner2 authored 4 years ago
  
  f3e8dfd6
- Reminder to set PYTHONPATH before module installation. · ea12750d
  ameyner2 authored 4 years ago
  
  ea12750d
- Notes on re-generating gnomaAD if needed. · a482667b
  ameyner2 authored 4 years ago
  
  a482667b
- Reconfigured generic python module section · 47a33651
  ameyner2 authored 4 years ago
  
  47a33651
- Added XlsxWriter · f0e21b68
  ameyner2 authored 4 years ago
  
  f0e21b68
- Details on custom VerifyBamID panel · 3917eacb
  ameyner2 authored 4 years ago
  
  3917eacb
- Delete genomic_data_storyboard_DRAFT4_FINAL.pdf · 667e5942
  ameyner2 authored 4 years ago
  
  667e5942
- Delete genomic_data_storyboard_DRAFT4_FINAL.ai · 4820532f
  ameyner2 authored 4 years ago
  
  4820532f
- Delete genomic_data_chart.jpg · 5d1e5d1e
  ameyner2 authored 4 years ago
  
  5d1e5d1e
- Added info about input reads from ECRF · 2b045e62
  ameyner2 authored 4 years ago
  
  2b045e62
- Fixed paths, needed abs path for MultiQC · a37dad4d
  ameyner2 authored 4 years ago
  
  a37dad4d
- Added date for bcbio dev branch, VASE installation instructions. · 52ad2ec1
  ameyner2 authored 4 years ago
  
  52ad2ec1
Aug 26, 2020
- No need for dummy G2P entry · c2d4d275
  ameyner2 authored 4 years ago
  
  c2d4d275
- datatarget variation included in base install · c9bbc565
  ameyner2 authored 4 years ago
  
  c9bbc565
- Started documenting ECRF process. · 01106da9
  ameyner2 authored 4 years ago
  
  01106da9
Aug 25, 2020
- Update Software_installation.md · ad7bdf73
  ameyner2 authored 4 years ago
  
  ad7bdf73
- Fix bcbio path · 815ee217
  ameyner2 authored 4 years ago
  
  815ee217
- Install data targets in stages, use previously compiled gnomaAD v3 · 328b1584
  ameyner2 authored 4 years ago
  
  328b1584
Aug 24, 2020
- Removed gnomad datatarget from 2nd installation command. · ba5a6bc7
  ameyner2 authored 4 years ago
  
  ba5a6bc7
- Instructions for manual installation of gnomAD. · fbbccaef
  ameyner2 authored 4 years ago
  
  fbbccaef
Aug 19, 2020
- Samtools/HTSlib version updates · da0410e4
  ameyner2 authored 4 years ago
  
  da0410e4
- Changed log directory to scratch. · 494dcbbd
  ameyner2 authored 4 years ago
  
  494dcbbd
- Bcbio tools path · a426c516
  ameyner2 authored 4 years ago
  
  a426c516
- Tool path. · 07622dc8
  ameyner2 authored 4 years ago
  
  07622dc8